PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_80CF1975F.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 410aa    MW: 48248.5 Da    PI: 9.1903
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_80CF1975F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.85e-2570164191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 
                            +fYn+YA e GFsvrk + +  + n++i+ r++vC++eg +ee++ k   ++++r++r+ tr+gCkak+++ +   +g+w v+++  e
  Traes_5AL_80CF1975F.1  70 EFYNKYALEKGFSVRKGYVEWDEANEKIILRKLVCTREGCHEEKHMKrkrEDRKRKPRNITRVGCKAKFVIARVAkTGHWFVKDFIDE 157
                            6***************************************9999888777889999***************99988************ PP

                   FAR1  85 HnHelap 91 
                            HnH+lap
  Traes_5AL_80CF1975F.1 158 HNHPLAP 164
                            ****986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-2370164IPR004330FAR1 DNA binding domain
PfamPF105511.9E-31285374IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MTSIPPSSLR RRLPLTIPHA CRRQWNKFRH SKISVRQNIQ EDMADISAEC MAKYDDIVSR  60
MFDSEEEGFE FYNKYALEKG FSVRKGYVEW DEANEKIILR KLVCTREGCH EEKHMKRKRE  120
DRKRKPRNIT RVGCKAKFVI ARVAKTGHWF VKDFIDEHNH PLAPRDLACF LRSHRRISDE  180
QKADIIEMQS VGIRKHKIMD VLCMQSGGYD HVGCMLRDIY NFCHRYKQEI VAAGDAQTVI  240
RHMMARQERD PDYFFKYLVD KDGHLKGLFW SDTQSRLDYE AFGDVVVFDS TYRTNKYNLS  300
FVPFVGLNHH RNTVIFGCGI ISHETNEAYE WMLRTFSEAM SQKHPISVIT DGDLAMQRAI  360
RVVWPDSYHR LCVCTFSRTS YAICMMMRLG KNSDLSYMTR LLLKSMRENG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117124KREDRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231784.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5EYR70.0W5EYR7_WHEAT; Uncharacterized protein
STRINGBRADI2G37795.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-62FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]